Gene name
ATRN (KIAA0548,Mgca,Mg)
Experiment(s)
For this entry:
ATRN_HUMAN (ATRN)
| Species | Homo sapiens |
|---|---|
| Localization | Non polar membrane |
| Reference |
Touzelet O,Broadbent L,Armstrong SD,Aljabr W,Cloutman-Green E,Power UF,Hiscox JA (2020) The Secretome Profiling of a Pediatric Airway Epithelium Infected with hRSV Identified Aberrant Apical/Basolateral Trafficking and Novel Immune Modulating (CXCL6, CXCL16, CSF3) and Antiviral (CEACAM1) Proteins., Mol Cell Proteomics, 19, 793-807. [PubMed] [DOI] |
| Evidence level | Large-scale proteomics |
| Organ | Lung |
| Cell | Airway epithel cells |
| Notes |
For ortholog entries:
Alignment and sequence features
Wheel: zoom in/out; drag: scroll left/right. Sequences and features are drawn in three lines. Bottom line: topology (red bar: cytoplasmic region; yellow bar: transmembrane region; transmembrane re-entrant loop; blue bar: extracellular region; black bar: signal peptide). Middle line: amino acid sequence (grey bar or one letter code). Top line: post translational modifications (Y: N-glycosylation site; Y: O-glycosylation site;P: phosphorylation site), intrinsically disordered regions (light green bar: IDR) and short linear motifs (light steel blue bar: ELM region).
CCTOP topology prediction
| Start | End | Localisation |
|---|---|---|
| 1 | 28 | Signal peptide |
| 29 | 1278 | Extracellular |
| 1279 | 1300 | Membrane |
| 1301 | 1429 | Cytoplasmic |
Eukaryotic Linear Motif (ELM)
| Start | End | Sequence | Motif |
|---|---|---|---|
| 1413 | 1417 | AVRNR | TRG_ER_diArg_1 |
Phosphorylation
Glycosylation
Family and domain data
| Database | Domain/Family name |
|---|---|
| InterPro | Attractin-like_CTLD |
| InterPro | C-type_lectin-like |
| InterPro | C-type_lectin-like/link_sf |
| InterPro | CTDL_fold |
| InterPro | CUB_dom |
| InterPro | EGF-like_dom |
| InterPro | Gal_Oxase/kelch_b-propeller |
| InterPro | Kelch-typ_b-propeller |
| InterPro | Kelch_1 |
| InterPro | Laminin_EGF |
| InterPro | Plexin_repeat |
| InterPro | PSI |
| InterPro | Sperma_CUB_dom_sf |
| Pfam | CUB |
| Pfam | Kelch_1 |
| Pfam | Lectin_C |
| Pfam | PSI |