PolarProtDb

Gene name

PDPN (GP36)

Experiment(s)

For this entry:

For ortholog entries:

Alignment and sequence features

Wheel: zoom in/out; drag: scroll left/right. Sequences and features are drawn in three lines. Bottom line: topology (red bar: cytoplasmic region; yellow bar: transmembrane region; transmembrane re-entrant loop; blue bar: extracellular region; black bar: signal peptide). Middle line: amino acid sequence (grey bar or one letter code). Top line: post translational modifications (Y: N-glycosylation site; Y: O-glycosylation site;P: phosphorylation site), intrinsically disordered regions (light green bar: IDR) and short linear motifs (light steel blue bar: ELM region).

CCTOP topology prediction

Start	End	Localisation
1	23	Signal peptide
24	128	Extracellular
129	153	Membrane
154	162	Cytoplasmic

Glycosylation

Position	Site resource	Glycan resource	PubMed link(s)
32	O-GlycoProteomDB
34	O-GlycoProteomDB
52	O-GlycoProteomDB
52	UniProtKB		17222411 , 25458834
55	O-GlycoProteomDB
56	O-GlycoProteomDB
62	O-GlycoProteomDB
65	O-GlycoProteomDB
66	O-GlycoProteomDB
70	O-GlycoProteomDB
70	UniCarbKB	$WURCS=2.0/2,2,1/[uxxxxh_2*NCC/3=O][uxxxxh]/1-2/a?\|b?}-{a?\|b?$	30459171
71	O-GlycoProteomDB
74	O-GlycoProteomDB
76	O-GlycoProteomDB
85	O-GlycoProteomDB
86	O-GlycoProteomDB
88	O-GlycoProteomDB
96	O-GlycoProteomDB
98	O-GlycoProteomDB
100	UniCarbKB	$WURCS=2.0/2,2,1/[uxxxxh_2*NCC/3=O][uxxxxh]/1-2/a?\|b?}-{a?\|b?$	30459171
100	UniCarbKB		30459171
102	O-GlycoProteomDB
106	O-GlycoProteomDB
107	O-GlycoProteomDB
109	O-GlycoProteomDB
110	O-GlycoProteomDB

Family and domain data

Database	Domain/Family name
Pfam	Podoplanin

Interactions

With (links to EBI)	#Exp	PubMed links
TM14B_HUMAN	3	32296183

Protein can be found in apical membrane, Protein can be found in basal membrane, Protein can be found both membranes, Localisation is unknown.