PolarProtDb

Gene name

Slco1c1 (Bsat1,Oatp1c1,Oatpf,Slc21a14,OATP14)

Experiment(s)

For this entry:

SO1C1_RAT (Slco1c1)

Species	Rattus norvegicus
Localization	Non polar membrane
Reference	Roberts LM,Woodford K,Zhou M,Black DS,Haggerty JE,Tate EH,Grindstaff KK,Mengesha W,Raman C,Zerangue N (2008) Expression of the thyroid hormone transporters monocarboxylate transporter-8 (SLC16A2) and organic ion transporter-14 (SLCO1C1) at the blood-brain barrier., Endocrinology, 149, 6251-61. [PubMed] [DOI]
Evidence level	Antibody staining
Organ	Vessels
Cell	Brain capillary endothelial cells
Notes

For ortholog entries:

Alignment and sequence features

Wheel: zoom in/out; drag: scroll left/right. Sequences and features are drawn in three lines. Bottom line: topology (red bar: cytoplasmic region; yellow bar: transmembrane region; transmembrane re-entrant loop; blue bar: extracellular region; black bar: signal peptide). Middle line: amino acid sequence (grey bar or one letter code). Top line: post translational modifications (Y: N-glycosylation site; Y: O-glycosylation site;P: phosphorylation site), intrinsically disordered regions (light green bar: IDR) and short linear motifs (light steel blue bar: ELM region).

CCTOP topology prediction

Start	End	Localisation
1	43	Cytoplasmic
44	63	Membrane
64	79	Extracellular
80	103	Membrane
104	110	Cytoplasmic
111	132	Membrane
133	189	Extracellular
190	205	Membrane
206	225	Cytoplasmic
226	248	Membrane
249	274	Extracellular
275	297	Membrane
298	357	Cytoplasmic
358	379	Membrane
380	396	Extracellular
397	418	Membrane
419	427	Cytoplasmic
428	449	Membrane
450	557	Extracellular
558	581	Membrane
582	593	Cytoplasmic
594	615	Membrane
616	644	Extracellular
645	668	Membrane
669	716	Cytoplasmic

Glycosylation

Position	Site resource	Glycan resource	PubMed link(s)
537	UniCarbKB	$WURCS=2.0/2,7,6/[uxxxxh_2*NCC/3=O][uxxxxh]/1-1-2-2-2-2-2/a?\|b?\|c?\|d?\|e?\|f?\|g?}-{a?\|b?\|c?\|d?\|e?\|f?\|g?_a?\|b?\|c?\|d?\|e?\|f?\|g?}-{a?\|b?\|c?\|d?\|e?\|f?\|g?_a?\|b?\|c?\|d?\|e?\|f?\|g?}-{a?\|b?\|c?\|d?\|e?\|f?\|g?_a?\|b?\|c?\|d?\|e?\|f?\|g?}-{a?\|b?\|c?\|d?\|e?\|f?\|g?_a?\|b?\|c?\|d?\|e?\|f?\|g?}-{a?\|b?\|c?\|d?\|e?\|f?\|g?_a?\|b?\|c?\|d?\|e?\|f?\|g?}-{a?\|b?\|c?\|d?\|e?\|f?\|g?$	24090084
537	UniCarbKB		24090084

Family and domain data

Database	Domain/Family name
InterPro	Kazal_dom
InterPro	Kazal_dom_sf
InterPro	MFS_dom
InterPro	MFS_trans_sf
InterPro	OATP
InterPro	OATP1C1
Pfam	Kazal_2
Pfam	OATP